"""Base class for MultiDiGraph."""
# Copyright (C) 2004-2016 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
from copy import deepcopy
import networkx as nx
from networkx.classes.graph import Graph # for doctests
from networkx.classes.digraph import DiGraph
from networkx.classes.multigraph import MultiGraph
from networkx.exception import NetworkXError
__author__ = """\n""".join(['Aric Hagberg (hagberg@lanl.gov)',
'Pieter Swart (swart@lanl.gov)',
'Dan Schult(dschult@colgate.edu)'])
[docs]class MultiDiGraph(MultiGraph,DiGraph):
"""A directed graph class that can store multiedges.
Multiedges are multiple edges between two nodes. Each edge
can hold optional data or attributes.
A MultiDiGraph holds directed edges. Self loops are allowed.
Nodes can be arbitrary (hashable) Python objects with optional
key/value attributes.
Edges are represented as links between nodes with optional
key/value attributes.
Parameters
----------
data : input graph
Data to initialize graph. If data=None (default) an empty
graph is created. The data can be any format that is supported
by the to_networkx_graph() function, currently including edge list,
dict of dicts, dict of lists, NetworkX graph, NumPy matrix
or 2d ndarray, SciPy sparse matrix, or PyGraphviz graph.
attr : keyword arguments, optional (default= no attributes)
Attributes to add to graph as key=value pairs.
See Also
--------
Graph
DiGraph
MultiGraph
Examples
--------
Create an empty graph structure (a "null graph") with no nodes and
no edges.
>>> G = nx.MultiDiGraph()
G can be grown in several ways.
**Nodes:**
Add one node at a time:
>>> G.add_node(1)
Add the nodes from any container (a list, dict, set or
even the lines from a file or the nodes from another graph).
>>> G.add_nodes_from([2,3])
>>> G.add_nodes_from(range(100,110))
>>> H=nx.path_graph(10)
>>> G.add_nodes_from(H)
In addition to strings and integers any hashable Python object
(except None) can represent a node, e.g. a customized node object,
or even another Graph.
>>> G.add_node(H)
**Edges:**
G can also be grown by adding edges.
Add one edge,
>>> key = G.add_edge(1, 2)
a list of edges,
>>> keys = G.add_edges_from([(1,2),(1,3)])
or a collection of edges,
>>> keys = G.add_edges_from(H.edges())
If some edges connect nodes not yet in the graph, the nodes
are added automatically. If an edge already exists, an additional
edge is created and stored using a key to identify the edge.
By default the key is the lowest unused integer.
>>> keys = G.add_edges_from([(4,5,dict(route=282)), (4,5,dict(route=37))])
>>> G[4]
{5: {0: {}, 1: {'route': 282}, 2: {'route': 37}}}
**Attributes:**
Each graph, node, and edge can hold key/value attribute pairs
in an associated attribute dictionary (the keys must be hashable).
By default these are empty, but can be added or changed using
add_edge, add_node or direct manipulation of the attribute
dictionaries named graph, node and edge respectively.
>>> G = nx.MultiDiGraph(day="Friday")
>>> G.graph
{'day': 'Friday'}
Add node attributes using add_node(), add_nodes_from() or G.node
>>> G.add_node(1, time='5pm')
>>> G.add_nodes_from([3], time='2pm')
>>> G.node[1]
{'time': '5pm'}
>>> G.node[1]['room'] = 714
>>> del G.node[1]['room'] # remove attribute
>>> list(G.nodes(data=True))
[(1, {'time': '5pm'}), (3, {'time': '2pm'})]
Warning: adding a node to G.node does not add it to the graph.
Add edge attributes using add_edge(), add_edges_from(), subscript
notation, or G.edge.
>>> key = G.add_edge(1, 2, weight=4.7 )
>>> keys = G.add_edges_from([(3,4),(4,5)], color='red')
>>> keys = G.add_edges_from([(1,2,{'color':'blue'}), (2,3,{'weight':8})])
>>> G[1][2][0]['weight'] = 4.7
>>> G.edge[1][2][0]['weight'] = 4
**Shortcuts:**
Many common graph features allow python syntax to speed reporting.
>>> 1 in G # check if node in graph
True
>>> [n for n in G if n<3] # iterate through nodes
[1, 2]
>>> len(G) # number of nodes in graph
5
>>> G[1] # adjacency dict keyed by neighbor to edge attributes
... # Note: you should not change this dict manually!
{2: {0: {'weight': 4}, 1: {'color': 'blue'}}}
The fastest way to traverse all edges of a graph is via
adjacency(), but the edges() method is often more convenient.
>>> for n,nbrsdict in G.adjacency():
... for nbr,keydict in nbrsdict.items():
... for key,eattr in keydict.items():
... if 'weight' in eattr:
... (n,nbr,eattr['weight'])
(1, 2, 4)
(2, 3, 8)
>>> list(G.edges(data='weight'))
[(1, 2, 4), (1, 2, None), (2, 3, 8), (3, 4, None), (4, 5, None)]
**Reporting:**
Simple graph information is obtained using methods.
Reporting methods usually return iterators instead of containers
to reduce memory usage.
Methods exist for reporting nodes(), edges(), neighbors() and degree()
as well as the number of nodes and edges.
For details on these and other miscellaneous methods, see below.
**Subclasses (Advanced):**
The MultiDiGraph class uses a dict-of-dict-of-dict-of-dict structure.
The outer dict (node_dict) holds adjacency information keyed by node.
The next dict (adjlist_dict) represents the adjacency information and holds
edge_key dicts keyed by neighbor. The edge_key dict holds each edge_attr
dict keyed by edge key. The inner dict (edge_attr_dict) represents
the edge data and holds edge attribute values keyed by attribute names.
Each of these four dicts in the dict-of-dict-of-dict-of-dict
structure can be replaced by a user defined dict-like object.
In general, the dict-like features should be maintained but
extra features can be added. To replace one of the dicts create
a new graph class by changing the class(!) variable holding the
factory for that dict-like structure. The variable names
are node_dict_factory, adjlist_inner_dict_factory, adjlist_outer_dict_factory,
and edge_attr_dict_factory.
node_dict_factory : function, (default: dict)
Factory function to be used to create the dict containing node
attributes, keyed by node id.
It should require no arguments and return a dict-like object
adjlist_outer_dict_factory : function, (default: dict)
Factory function to be used to create the outer-most dict
in the data structure that holds adjacency info keyed by node.
It should require no arguments and return a dict-like object.
adjlist_inner_dict_factory : function, (default: dict)
Factory function to be used to create the adjacency list
dict which holds multiedge key dicts keyed by neighbor.
It should require no arguments and return a dict-like object.
edge_key_dict_factory : function, (default: dict)
Factory function to be used to create the edge key dict
which holds edge data keyed by edge key.
It should require no arguments and return a dict-like object.
edge_attr_dict_factory : function, (default: dict)
Factory function to be used to create the edge attribute
dict which holds attrbute values keyed by attribute name.
It should require no arguments and return a dict-like object.
Examples
--------
Create a multigraph subclass that tracks the order nodes are added.
>>> from collections import OrderedDict
>>> class OrderedGraph(nx.MultiDiGraph):
... node_dict_factory = OrderedDict
... adjlist_outer_dict_factory = OrderedDict
>>> G = OrderedGraph()
>>> G.add_nodes_from( (2,1) )
>>> list(G.nodes())
[2, 1]
>>> keys = G.add_edges_from( ((2,2), (2,1), (2,1), (1,1)) )
>>> list(G.edges())
[(2, 1), (2, 1), (2, 2), (1, 1)]
Create a multdigraph object that tracks the order nodes are added
and for each node track the order that neighbors are added and for
each neighbor tracks the order that multiedges are added.
>>> class OrderedGraph(nx.MultiDiGraph):
... node_dict_factory = OrderedDict
... adjlist_outer_dict_factory = OrderedDict
... adjlist_inner_dict_factory = OrderedDict
... edge_key_dict_factory = OrderedDict
>>> G = OrderedGraph()
>>> G.add_nodes_from( (2,1) )
>>> list(G.nodes())
[2, 1]
>>> elist = ((2,2), (2,1,2,{'weight':0.1}), (2,1,1,{'weight':0.2}), (1,1))
>>> keys = G.add_edges_from(elist)
>>> list(G.edges(keys=True))
[(2, 2, 0), (2, 1, 2), (2, 1, 1), (1, 1, 0)]
"""
# node_dict_factory=dict # already assigned in Graph
# adjlist_outer_dict_factory=dict
# adjlist_inner_dict_factory=dict
edge_key_dict_factory = dict
# edge_attr_dict_factory=dict
[docs] def __init__(self, data=None, **attr):
self.edge_key_dict_factory = self.edge_key_dict_factory
DiGraph.__init__(self, data, **attr)
[docs] def add_edge(self, u, v, key=None, **attr):
"""Add an edge between u and v.
The nodes u and v will be automatically added if they are
not already in the graph.
Edge attributes can be specified with keywords or by directly
accessing the edge's attribute dictionary. See examples below.
Parameters
----------
u, v : nodes
Nodes can be, for example, strings or numbers.
Nodes must be hashable (and not None) Python objects.
key : hashable identifier, optional (default=lowest unused integer)
Used to distinguish multiedges between a pair of nodes.
attr_dict : dictionary, optional (default= no attributes)
Dictionary of edge attributes. Key/value pairs will
update existing data associated with the edge.
attr : keyword arguments, optional
Edge data (or labels or objects) can be assigned using
keyword arguments.
Returns
-------
The edge key assigned to the edge.
See Also
--------
add_edges_from : add a collection of edges
Notes
-----
To replace/update edge data, use the optional key argument
to identify a unique edge. Otherwise a new edge will be created.
NetworkX algorithms designed for weighted graphs cannot use
multigraphs directly because it is not clear how to handle
multiedge weights. Convert to Graph using edge attribute
'weight' to enable weighted graph algorithms.
Default keys are generated using the method `new_edge_key()`.
This method can be overridden by subclassing the base class and
providing a custom `new_edge_key()` method.
Examples
--------
The following all add the edge e=(1,2) to graph G:
>>> G = nx.MultiDiGraph()
>>> e = (1,2)
>>> key = G.add_edge(1, 2) # explicit two-node form
>>> G.add_edge(*e) # single edge as tuple of two nodes
1
>>> G.add_edges_from( [(1,2)] ) # add edges from iterable container
[2]
Associate data to edges using keywords:
>>> key = G.add_edge(1, 2, weight=3)
>>> key = G.add_edge(1, 2, key=0, weight=4) # update data for key=0
>>> key = G.add_edge(1, 3, weight=7, capacity=15, length=342.7)
For non-string associations, directly access the edge's attribute
dictionary.
"""
# add nodes
if u not in self.succ:
self.succ[u] = self.adjlist_inner_dict_factory()
self.pred[u] = self.adjlist_inner_dict_factory()
self.node[u] = {}
if v not in self.succ:
self.succ[v] = self.adjlist_inner_dict_factory()
self.pred[v] = self.adjlist_inner_dict_factory()
self.node[v] = {}
if key is None:
key = self.new_edge_key(u, v)
if v in self.succ[u]:
keydict = self.adj[u][v]
datadict = keydict.get(key, self.edge_key_dict_factory())
datadict.update(attr)
keydict[key] = datadict
else:
# selfloops work this way without special treatment
datadict = self.edge_attr_dict_factory()
datadict.update(attr)
keydict = self.edge_key_dict_factory()
keydict[key] = datadict
self.succ[u][v] = keydict
self.pred[v][u] = keydict
return key
[docs] def remove_edge(self, u, v, key=None):
"""Remove an edge between u and v.
Parameters
----------
u, v : nodes
Remove an edge between nodes u and v.
key : hashable identifier, optional (default=None)
Used to distinguish multiple edges between a pair of nodes.
If None remove a single (arbitrary) edge between u and v.
Raises
------
NetworkXError
If there is not an edge between u and v, or
if there is no edge with the specified key.
See Also
--------
remove_edges_from : remove a collection of edges
Examples
--------
>>> G = nx.MultiDiGraph()
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.remove_edge(0,1)
>>> e = (1,2)
>>> G.remove_edge(*e) # unpacks e from an edge tuple
For multiple edges
>>> G = nx.MultiDiGraph()
>>> G.add_edges_from([(1,2),(1,2),(1,2)]) # key_list returned
[0, 1, 2]
>>> G.remove_edge(1,2) # remove a single (arbitrary) edge
For edges with keys
>>> G = nx.MultiDiGraph()
>>> G.add_edge(1,2,key='first')
'first'
>>> G.add_edge(1,2,key='second')
'second'
>>> G.remove_edge(1,2,key='second')
"""
try:
d = self.adj[u][v]
except (KeyError):
raise NetworkXError(
"The edge %s-%s is not in the graph." % (u, v))
# remove the edge with specified data
if key is None:
d.popitem()
else:
try:
del d[key]
except (KeyError):
raise NetworkXError(
"The edge %s-%s with key %s is not in the graph." % (u, v, key))
if len(d) == 0:
# remove the key entries if last edge
del self.succ[u][v]
del self.pred[v][u]
[docs] def edges(self, nbunch=None, data=False, keys=False, default=None):
"""Return an iterator over the edges.
Edges are returned as tuples with optional data and keys
in the order (node, neighbor, key, data).
Parameters
----------
nbunch : iterable container, optional (default= all nodes)
A container of nodes. The container will be iterated
through once.
data : string or bool, optional (default=False)
The edge attribute returned in 3-tuple (u,v,ddict[data]).
If True, return edge attribute dict in 3-tuple (u,v,ddict).
If False, return 2-tuple (u,v).
keys : bool, optional (default=False)
If True, return edge keys with each edge.
default : value, optional (default=None)
Value used for edges that dont have the requested attribute.
Only relevant if data is not True or False.
Returns
-------
edge : iterator
An iterator over (u,v), (u,v,d) or (u,v,key,d) tuples of edges.
Notes
-----
Nodes in nbunch that are not in the graph will be (quietly) ignored.
For directed graphs this returns the out-edges.
Examples
--------
>>> G = nx.MultiDiGraph()
>>> nx.add_path(G, [0, 1, 2])
>>> key = G.add_edge(2,3,weight=5)
>>> [e for e in G.edges()]
[(0, 1), (1, 2), (2, 3)]
>>> list(G.edges(data=True)) # default data is {} (empty dict)
[(0, 1, {}), (1, 2, {}), (2, 3, {'weight': 5})]
>>> list(G.edges(data='weight', default=1))
[(0, 1, 1), (1, 2, 1), (2, 3, 5)]
>>> list(G.edges(keys=True)) # default keys are integers
[(0, 1, 0), (1, 2, 0), (2, 3, 0)]
>>> list(G.edges(data=True,keys=True)) # default keys are integers
[(0, 1, 0, {}), (1, 2, 0, {}), (2, 3, 0, {'weight': 5})]
>>> list(G.edges(data='weight',default=1,keys=True))
[(0, 1, 0, 1), (1, 2, 0, 1), (2, 3, 0, 5)]
>>> list(G.edges([0,2]))
[(0, 1), (2, 3)]
>>> list(G.edges(0))
[(0, 1)]
See Also
--------
in_edges, out_edges
"""
if nbunch is None:
nodes_nbrs = self.adj.items()
else:
nodes_nbrs = ((n, self.adj[n]) for n in self.nbunch_iter(nbunch))
if data is True:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key, ddict in keydict.items():
yield (n, nbr, key, ddict) if keys else (n, nbr, ddict)
elif data is not False:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key, ddict in keydict.items():
d = ddict[data] if data in ddict else default
yield (n, nbr, key, d) if keys else (n, nbr, d)
else:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key in keydict:
yield (n, nbr, key) if keys else (n, nbr)
# alias out_edges to edges
out_edges = edges
[docs] def in_edges(self, nbunch=None, data=False, keys=False, default=None):
"""Return an iterator over the incoming edges.
Parameters
----------
nbunch : iterable container, optional (default= all nodes)
A container of nodes. The container will be iterated
through once.
data : string or bool, optional (default=False)
The edge attribute returned in 3-tuple (u,v,ddict[data]).
If True, return edge attribute dict in 3-tuple (u,v,ddict).
If False, return 2-tuple (u,v).
keys : bool, optional (default=False)
If True, return edge keys with each edge.
default : value, optional (default=None)
Value used for edges that dont have the requested attribute.
Only relevant if data is not True or False.
Returns
-------
in_edge : iterator
An iterator over (u,v), (u,v,d) or (u,v,key,d) tuples of edges.
See Also
--------
edges : return an iterator over edges
"""
if nbunch is None:
nodes_nbrs = self.pred.items()
else:
nodes_nbrs = ((n, self.pred[n]) for n in self.nbunch_iter(nbunch))
if data is True:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key, data in keydict.items():
if keys:
yield (nbr, n, key, data)
else:
yield (nbr, n, data)
elif data is not False:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key, ddict in keydict.items():
d = ddict[data] if data in ddict else default
if keys:
yield (nbr, n, key, d)
else:
yield (nbr, n, d)
else:
for n, nbrs in nodes_nbrs:
for nbr, keydict in nbrs.items():
for key, data in keydict.items():
if keys:
yield (nbr, n, key)
else:
yield (nbr, n)
[docs] def degree(self, nbunch=None, weight=None):
"""Return an iterator for (node, degree) or degree for single node.
The node degree is the number of edges adjacent to the node.
This function returns the degree for a single node or an iterator
for a bunch of nodes or if nothing is passed as argument.
Parameters
----------
nbunch : iterable container, optional (default=all nodes)
A container of nodes. The container will be iterated
through once.
weight : string or None, optional (default=None)
The edge attribute that holds the numerical value used
as a weight. If None, then each edge has weight 1.
The degree is the sum of the edge weights.
Returns
-------
If a single nodes is requested
deg : int
Degree of the node
OR if multiple nodes are requested
nd_iter : iterator
The iterator returns two-tuples of (node, degree).
See Also
--------
out_degree, in_degree
Examples
--------
>>> G = nx.MultiDiGraph()
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.degree(0) # node 0 with degree 1
1
>>> list(G.degree([0,1]))
[(0, 1), (1, 2)]
"""
# Test to see if nbunch is a single node, an iterator of nodes or
# None(indicating all nodes). (nbunch in self) is True when nbunch
# is a single node.
if nbunch in self:
succ = self.succ[nbunch]
pred = self.pred[nbunch]
if weight is None:
indeg = sum([len(data) for data in pred.values()])
outdeg = sum([len(data) for data in succ.values()])
return indeg + outdeg
s = (sum(sum(data.get(weight, 1) for data in keydict.values())
for keydict in succ.values())) + (sum(sum(data.get(weight, 1)
for data in keydict.values()) for keydict in pred.values()))
return s
if nbunch is None:
nodes_nbrs = ( (n, succ, self.pred[n])
for n,succ in self.succ.items() )
else:
nodes_nbrs = ( (n, self.succ[n], self.pred[n])
for n in self.nbunch_iter(nbunch))
if weight is None:
def d_iter():
for n, succ, pred in nodes_nbrs:
indeg = sum([len(data) for data in pred.values()])
outdeg = sum([len(data) for data in succ.values()])
yield (n, indeg + outdeg)
else:
# edge weighted graph - degree is sum of nbr edge weights
def d_iter():
for n, succ, pred in nodes_nbrs:
deg = sum([d.get(weight, 1)
for data in pred.values()
for d in data.values()])
deg += sum([d.get(weight, 1)
for data in succ.values()
for d in data.values()])
yield (n, deg)
return d_iter()
[docs] def in_degree(self, nbunch=None, weight=None):
"""Return an iterator for (node, in-degree) or in-degree for single node.
The node in-degree is the number of edges pointing in to the node.
This function returns the in-degree for a single node or an iterator
for a bunch of nodes or if nothing is passed as argument.
Parameters
----------
nbunch : iterable container, optional (default=all nodes)
A container of nodes. The container will be iterated
through once.
weight : string or None, optional (default=None)
The edge attribute that holds the numerical value used
as a weight. If None, then each edge has weight 1.
The degree is the sum of the edge weights adjacent to the node.
Returns
-------
If a single node is requested
deg : int
Degree of the node
OR if multiple nodes are requested
nd_iter : iterator
The iterator returns two-tuples of (node, in-degree).
See Also
--------
degree, out_degree
Examples
--------
>>> G = nx.MultiDiGraph()
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.in_degree(0) # node 0 with degree 0
0
>>> list(G.in_degree([0,1]))
[(0, 0), (1, 1)]
"""
# Test to see if nbunch is a single node, an iterator of nodes or
# None(indicating all nodes). (nbunch in self) is True when nbunch
# is a single node.
if nbunch in self:
pred = self.pred[nbunch]
if weight is None:
return sum(len(data) for data in pred.values())
return (sum(sum(data.get(weight,1) for data in keydict.values())
for keydict in pred.values()))
if nbunch is None:
nodes_nbrs = self.pred.items()
else:
nodes_nbrs = ((n, self.pred[n]) for n in self.nbunch_iter(nbunch))
if weight is None:
def d_iter():
for n, nbrs in nodes_nbrs:
yield (n, sum([len(data) for data in nbrs.values()]))
else:
# edge weighted graph - degree is sum of nbr edge weights
def d_iter():
for n, pred in nodes_nbrs:
deg = sum([d.get(weight, 1)
for data in pred.values()
for d in data.values()])
yield (n, deg)
return d_iter()
[docs] def out_degree(self, nbunch=None, weight=None):
"""Return an iterator for (node, out-degree) or out-degree for single node.
The node out-degree is the number of edges pointing out of the node.
This function returns the out-degree for a single node or an iterator
for a bunch of nodes or if nothing is passed as argument.
Parameters
----------
nbunch : iterable container, optional (default=all nodes)
A container of nodes. The container will be iterated
through once.
weight : string or None, optional (default=None)
The edge attribute that holds the numerical value used
as a weight. If None, then each edge has weight 1.
The degree is the sum of the edge weights.
Returns
-------
If a single node is requested
deg : int
Degree of the node
OR if multiple nodes are requested
nd_iter : iterator
The iterator returns two-tuples of (node, out-degree).
See Also
--------
degree, in_degree
Examples
--------
>>> G = nx.MultiDiGraph()
>>> nx.add_path(G, [0, 1, 2, 3])
>>> G.out_degree(0) # node 0 with degree 1
1
>>> list(G.out_degree([0,1]))
[(0, 1), (1, 1)]
"""
# Test to see if nbunch is a single node, an iterator of nodes or
# None(indicating all nodes). (nbunch in self) is True when nbunch
# is a single node.
if nbunch in self:
succ = self.succ[nbunch]
if weight is None:
return sum(len(data) for data in succ.values())
return (sum(sum(data.get(weight,1) for data in keydict.values())
for keydict in succ.values()))
if nbunch is None:
nodes_nbrs = self.succ.items()
else:
nodes_nbrs = ((n, self.succ[n]) for n in self.nbunch_iter(nbunch))
if weight is None:
def d_iter():
for n, nbrs in nodes_nbrs:
yield (n, sum([len(data) for data in nbrs.values()]))
else:
def d_iter():
for n, succ in nodes_nbrs:
deg = sum([d.get(weight, 1)
for data in succ.values()
for d in data.values()])
yield (n, deg)
return d_iter()
def is_multigraph(self):
"""Return True if graph is a multigraph, False otherwise."""
return True
def is_directed(self):
"""Return True if graph is directed, False otherwise."""
return True
[docs] def to_directed(self):
"""Return a directed copy of the graph.
Returns
-------
G : MultiDiGraph
A deepcopy of the graph.
Notes
-----
If edges in both directions (u,v) and (v,u) exist in the
graph, attributes for the new undirected edge will be a combination of
the attributes of the directed edges. The edge data is updated
in the (arbitrary) order that the edges are encountered. For
more customized control of the edge attributes use add_edge().
This returns a "deepcopy" of the edge, node, and
graph attributes which attempts to completely copy
all of the data and references.
This is in contrast to the similar G=DiGraph(D) which returns a
shallow copy of the data.
See the Python copy module for more information on shallow
and deep copies, http://docs.python.org/library/copy.html.
Examples
--------
>>> G = nx.Graph() # or MultiGraph, etc
>>> G.add_edge(0, 1)
>>> H = G.to_directed()
>>> list(H.edges())
[(0, 1), (1, 0)]
If already directed, return a (deep) copy
>>> G = nx.MultiDiGraph()
>>> key = G.add_edge(0, 1)
>>> H = G.to_directed()
>>> list(H.edges())
[(0, 1)]
"""
return deepcopy(self)
[docs] def to_undirected(self, reciprocal=False):
"""Return an undirected representation of the digraph.
Parameters
----------
reciprocal : bool (optional)
If True only keep edges that appear in both directions
in the original digraph.
Returns
-------
G : MultiGraph
An undirected graph with the same name and nodes and
with edge (u,v,data) if either (u,v,data) or (v,u,data)
is in the digraph. If both edges exist in digraph and
their edge data is different, only one edge is created
with an arbitrary choice of which edge data to use.
You must check and correct for this manually if desired.
Notes
-----
This returns a "deepcopy" of the edge, node, and
graph attributes which attempts to completely copy
all of the data and references.
This is in contrast to the similar D=DiGraph(G) which returns a
shallow copy of the data.
See the Python copy module for more information on shallow
and deep copies, http://docs.python.org/library/copy.html.
Warning: If you have subclassed MultiGraph to use dict-like objects
in the data structure, those changes do not transfer to the MultiDiGraph
created by this method.
"""
H = MultiGraph()
H.name = self.name
H.add_nodes_from(self)
if reciprocal is True:
H.add_edges_from((u, v, key, deepcopy(data))
for u, nbrs in self.adjacency()
for v, keydict in nbrs.items()
for key, data in keydict.items()
if self.has_edge(v, u, key))
else:
H.add_edges_from((u, v, key, deepcopy(data))
for u, nbrs in self.adjacency()
for v, keydict in nbrs.items()
for key, data in keydict.items())
H.graph = deepcopy(self.graph)
H.node = deepcopy(self.node)
return H
[docs] def subgraph(self, nbunch):
"""Return the subgraph induced on nodes in nbunch.
The induced subgraph of the graph contains the nodes in nbunch
and the edges between those nodes.
Parameters
----------
nbunch : list, iterable
A container of nodes which will be iterated through once.
Returns
-------
G : Graph
A subgraph of the graph with the same edge attributes.
Notes
-----
The graph, edge or node attributes just point to the original graph.
So changes to the node or edge structure will not be reflected in
the original graph while changes to the attributes will.
To create a subgraph with its own copy of the edge/node attributes use:
nx.Graph(G.subgraph(nbunch))
If edge attributes are containers, a deep copy can be obtained using:
G.subgraph(nbunch).copy()
For an inplace reduction of a graph to a subgraph you can remove nodes:
G.remove_nodes_from([ n in G if n not in set(nbunch)])
Examples
--------
>>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc
>>> H = G.subgraph([0,1,2])
>>> list(H.edges())
[(0, 1), (1, 2)]
"""
bunch = self.nbunch_iter(nbunch)
# create new graph and copy subgraph into it
H = self.__class__()
# copy node and attribute dictionaries
for n in bunch:
H.node[n] = self.node[n]
# namespace shortcuts for speed
H_succ = H.succ
H_pred = H.pred
self_succ = self.succ
self_pred = self.pred
# add nodes
for n in H:
H_succ[n] = H.adjlist_inner_dict_factory()
H_pred[n] = H.adjlist_inner_dict_factory()
# add edges
for u in H_succ:
Hnbrs = H_succ[u]
for v, edgedict in self_succ[u].items():
if v in H_succ:
# add both representations of edge: u-v and v-u
# they share the same edgedict
ed = edgedict.copy()
Hnbrs[v] = ed
H_pred[v][u] = ed
H.graph = self.graph
return H
[docs] def edge_subgraph(self, edges):
"""Returns the subgraph induced by the specified edges.
The induced subgraph contains each edge in `edges` and each
node incident to any one of those edges.
Parameters
----------
edges : iterable
An iterable of edges in this graph.
Returns
-------
G : Graph
An edge-induced subgraph of this graph with the same edge
attributes.
Notes
-----
The graph, edge, and node attributes in the returned subgraph
are references to the corresponding attributes in the original
graph. Thus changes to the node or edge structure of the
returned graph will not be reflected in the original graph, but
changes to the attributes will.
To create a subgraph with its own copy of the edge or node
attributes, use::
>>> nx.MultiDiGraph(G.edge_subgraph(edges)) # doctest: +SKIP
If edge attributes are containers, a deep copy of the attributes
can be obtained using::
>>> G.edge_subgraph(edges).copy() # doctest: +SKIP
Examples
--------
Get a subgraph induced by only those edges that have a certain
attribute::
>>> # Create a graph in which some edges are "good" and some "bad".
>>> G = nx.MultiDiGraph()
>>> key = G.add_edge(0, 1, key=0, good=True)
>>> key = G.add_edge(0, 1, key=1, good=False)
>>> key = G.add_edge(1, 2, key=0, good=False)
>>> key = G.add_edge(1, 2, key=1, good=True)
>>> # Keep only those edges that are marked as "good".
>>> edges = G.edges(keys=True, data='good')
>>> edges = ((u, v, k) for (u, v, k, good) in edges if good)
>>> H = G.edge_subgraph(edges)
>>> list(H.edges(keys=True, data=True))
[(0, 1, 0, {'good': True}), (1, 2, 1, {'good': True})]
"""
H = self.__class__()
succ = self.succ
# Filter out edges that don't correspond to nodes in the graph.
def is_in_graph(u, v, k):
return u in succ and v in succ[u] and k in succ[u][v]
edges = (e for e in edges if is_in_graph(*e))
for u, v, k in edges:
# Copy the node attributes if they haven't been copied
# already.
if u not in H.node:
H.node[u] = self.node[u]
if v not in H.node:
H.node[v] = self.node[v]
# Create an entry in the successors and predecessors
# dictionary for the nodes u and v if they don't exist yet.
if u not in H.succ:
H.succ[u] = H.adjlist_inner_dict_factory()
if v not in H.pred:
H.pred[v] = H.adjlist_inner_dict_factory()
# Create an entry in the edge dictionary for the edges (u,
# v) and (v, u) if the don't exist yet.
if v not in H.succ[u]:
H.succ[u][v] = H.edge_key_dict_factory()
if u not in H.pred[v]:
H.pred[v][u] = H.edge_key_dict_factory()
# Copy the edge attributes.
H.edge[u][v][k] = self.edge[u][v][k]
H.pred[v][u][k] = self.pred[v][u][k]
H.graph = self.graph
return H
[docs] def reverse(self, copy=True):
"""Return the reverse of the graph.
The reverse is a graph with the same nodes and edges
but with the directions of the edges reversed.
Parameters
----------
copy : bool optional (default=True)
If True, return a new DiGraph holding the reversed edges.
If False, reverse the reverse graph is created using
the original graph (this changes the original graph).
"""
if copy:
H = self.__class__(name="Reverse of (%s)"%self.name)
H.add_nodes_from(self)
H.add_edges_from((v, u, k, deepcopy(d)) for u, v, k, d
in self.edges(keys=True, data=True))
H.graph = deepcopy(self.graph)
H.node = deepcopy(self.node)
else:
self.pred, self.succ = self.succ, self.pred
self.adj = self.succ
H = self
return H